Welcome !

Data-science projects

Work in progress. Updates comming soon.

Scientific Contributions

Publications

First author:

• Kozlowski, D., Hassanaly-Goulamhoussen, R., Da-Rocha, M., Koutsovoulos, G., Bailly-Bechet, M., Danchin, E.G., 2021. Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest. Evolutionary Applications. https://doi.org/10.1111/eva.13246
  (Recommanded by PCI Evolutionary biology : https://doi.org/10.24072/pci.evolbiol.100106 )
• 1 publications in preparation

Co-author:

• Simion, P., Narayan, J., Houtain, A., Derzelle, A., Baudry, L., Nicolas, E., Arora, R., Cariou, M.,Cruaud, C., Gaudray, F.R., Gilbert, C., Guiglielmoni, N., Hespeels, B., Kozlowski, D., Labadie, K., Limasset, A., Lliros, M., Marbouty, M., Terwagne, M., Virgo, J., Cordaux, R., Danchin, E.G., Hallet, B., Koszul, R., Lenormand, T., Flot, J.-F., Van Doninck, K., 2020. Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga (in press) Science Advances
• Thi-Phan, N., Orjuela, J., Danchin, E., Klopp, C., Perfus-Barbeoch, L., Kozlowski, D., Koutsovoulos, G., Lopez-Roques, C., Bouchez, O., Zahm, M., Besnard, G., Bellafiore, S., 2020. Genome structure and content of the rice root-knot nematode Meloidogyne graminicola. Ecology and Evolution. https://doi.org/10.1002/ece3.6680
• Koutsovoulos, G.D., Marques, E., Arguel, M., Duret, L., Machado, A.C.Z., Carneiro, R.M.D.G., Kozlowski, D., Bailly‐Bechet, M., Castagnone‐Sereno, P., Albuquerque, E.V.S., Danchin, E.G.J., 2020. Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest. Evol. Appl. 13, 442–457. https://doi.org/10.1111/eva.12881
• Koutsovoulos, G.D., Poullet, M., Elashry, A., Kozlowski, D., Sallet, E., Da Rocha, M., Perfus-Barbeoch, L., Martin-Jimenez, C., Frey, J.E., Ahrens, C.H., Kiewnick, S. \& Danchin, E.G.J., 2020. The polyploid genome of the mitotic parthenogenetic root-knot nematode Meloidogyne enterolobii. Scientific Data. https://doi.org/10.1038/s41597-020-00666-0
• Blanc-Mathieu, R., Perfus-Barbeoch, L., Aury, J.-M., Da Rocha, M., Gouzy, J., Sallet, E., Martin-Jimenez, C., Bailly-Bechet, M., Castagnone-Sereno, P., Flot, J.-F., Kozlowski, D., Cazareth, J., Couloux, A., Da Silva, C., Guy, J., Kim-Jo, Y.-J., Rancurel, C., Schiex, T., Abad, P., Wincker, P., Danchin, E.G.J., 2017. Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. PLOS Genet. 13, e1006777. https://doi.org/10.1371/journal.pgen.1006777
• 5 publications in preparation

Conferences

Oral presentation:

• PEPI-IBIS days - special edition on AI in genome annotation. Sophia-Antipolis, France (11/2022).
  “NERD (Nematode EffectoR Discovery) a tool to predict proteins involved in nematodes’ plant parasitism!.”.
• SophIA-Summit. Sophia-Antipolis, France (11/2022).
  “NERD (Nematode EffectoR Discovery) a tool to predict proteins involved in nematodes’ plant parasitism!.”.
• NiceSeq - special edition on Genome evolution without sex. Nice, France (12/2020).
  “Transposable elements contribute to genome plasticity in asexually-reproducing plant pests”.
• Faseb - The Mobile DNA Conference. Palm Springs (CA), USA (07/2019).
  “Do transposable elements provide genomic plasticity in the absence of sex in devastating plant parasitic nematodes ?”.
• SPE - meetings. Rennes, France (05/2019). (Award for the best oral presentation)
  “Transposable Elements activity and role in M. incognita genome dynamic and adaptability.Transposable Elements activity and role in M. incognita genome dynamic and adaptability.”.
• SPE - meetings. Nice, France (08/2018).
  “Finding active Transposable Elements in Meloidogyne genomes.”.

Poster :

• ESEB - II nd Joint congress on evolutionary biology. Montpellier, France (08/2018).
  “Do transposable elements provide genomic plasticity in the absence of sex in devastating plant-parasitic nematodes ?”